LB, Amalek inside of us is what we can deal with now. It is a good analogy, but there will come a time, byz”H soon, that Moshiach will come and we will be able to fulfill the mitzvah of mechias Amalek. We just have to know 100% sure who is really Amalek, and only Moshiach can tell us that. So in the meantime, we have rabbis who give shiurim that give us different ways to interpret the issue, but it is definitely not going to eliminate the original purpose of the mitzvah.
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